IUCN / SSC Cat Specialist Group - Digital Cat Library |
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| Winter, S.; Meissner, R.; Greve, C.; Hamadou, A.B.; Horin, P.; Prost, S.; Burger, P.A. | |
| A chromosome-scale high-contiguity genome assembly of the cheetah (_Acinonyx jubatus_) | |
| 2023 Journal of Heredity (114): 271-278 | |
The cheetah (_Acinonyx jubatus_, SCHREBER 1775) is a large felid and is considered the fastest land animal. Historically, it inhabited open grassland across Africa, the Arabian Peninsula, and southwestern Asia; however, only small and fragmented populations remain today. Here, we present a de novo genome assembly of the cheetah based on PacBio continuous long reads and Hi-C proximity ligation data. The final assembly (VMU_Ajub_asm_v1.0) has a total length of 2.38 Gb, of which 99.7% are anchored into the expected 19 chromosome-scale scaffolds. The contig and scaffold N50 values of 96.8 Mb and 144.4 Mb, respectively, a BUSCO completeness of 95.4% and a k-mer completeness of 98.4%, emphasize the high quality of the assembly. Furthermore, annotation of the assembly identified 23,622 genes and a repeat content of 40.4%. This new highly contiguous and chromosome-scale assembly will greatly benefit conservation and evolutionary genomic analyses and will be a valuable resource, e.g., to gain a detailed understanding of the function and diversity of immune response genes in felids. |
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